Supplementary Data for:
"Large-scale Analysis of Branchpoint Usage Across Species and Cell Lines"
Supplementary tables:
Supplemental Table 1: Table of all branchpoints found in human introns (hg19 annotation)
Supplemental Table 2: Table of branchpoints found in human introns (hg19) using only ENCODE RNASeq samples.
Supplemental Table 3: Table of branchpoints found in mouse introns (mm9)
Supplemental Table 4: Table of branchpoints found in S. pombe introns (EF2).
Supplemental Table 5: Table of branchpoints found in human introns (hg19), all sources included. Binary quality metrics can be selected to pull a specific subset of branchpoints.
Supplemental Table 6: Table of branchpoints found in human introns (hg19), ENCODE sources only. Binary quality metrics can be selected to pull a specific subset of branchpoints.
Supplemental Table 7: Table of branchpoints found in mouse introns (mm9). Binary quality metrics can be selected to pull a specific subset of branchpoints.
Supplemental Table 8: Table of branchpoints found in S. pombe introns (EF2). Binary quality metrics can be selected to pull a specific subset of branchpoints.
Supplemental Table 9: Table of full branchpoint sequences inserted into minigene reporter constructs for Figure 2E.
Supplemental Table 10: Branchpoint counts and motif counts stratified by RNAseq sample.
Supplemental Table 11: Table of primers used for branchpoint validations.
Raw bed file of all recovered lariat reads
Lariat read finding scripts:
includes indexes for human (hg19), mouse (mm9) and s. pombe (EF2). See README.txt for usage
Lariat read finding scripts